BioJava code has two versions, the current one (version 3) and the legacy code. In one of these month’s messages to the BioJava development mailing list:
“Unfortunately, biojava 3 does not have any support for biosql at this stage. If you want to use that, you will have to use the biojava 1.x series…”
BioJava is extremely useful for Java projects, researchers, libraries and tools. And the same can be said about as BioSQL. The integration of these two tools would bring many benefits to the whole community (private companies, researchers, institutions, universities, etc).